PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18821.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 207aa    MW: 24254 Da    PI: 6.246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18821.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.64.5e-31161354127
        NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 f+F+Pt+eel+  +L+ k+ + + +l+++i+++ + ++++Pw+Lp  +k+ +++ ew+f ++ + k+++++r+nr+tk+g+Wk+tgk+++ +       
  PK18821.1  16 FFKFKPTEEELI-AHLNLKTMEMESDLDSCIAQIdHFCEWQPWELPplSKM-ESNMEWWFLCRPNYKNRHNNRSNRTTKTGFWKKTGKERKTKG----CN 109
                59**********.88999999999999899****669********953344.4567********************************999876....67 PP

        NAM 101 glkktLvfykgrapkgektdWvmheyr 127
                g k++Lvf++g++p  ++t+Wv+hey 
  PK18821.1 110 GRKRILVFHEGTSPG-KRTNWVLHEYY 135
                9********998886.9********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.1813158IPR003441NAC domain
SuperFamilySSF1019416.67E-3213158IPR003441NAC domain
PfamPF023651.8E-1715134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSDYVNESPL WVCPSFFKFK PTEEELIAHL NLKTMEMESD LDSCIAQIDH FCEWQPWELP  60
PLSKMESNME WWFLCRPNYK NRHNNRSNRT TKTGFWKKTG KERKTKGCNG RKRILVFHEG  120
TSPGKRTNWV LHEYYSLQPD IAFSLQKPAY VICRLKLKNH ENGQNEDAEK SPSSEIENDV  180
ENLLESTTTT PVNCQDEVNN DISSLQX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B5e-171315517162NAC domain-containing protein 19
4dul_A5e-171315517162NAC domain-containing protein 19
1ut7_B5e-171315517162NO APICAL MERISTEM PROTEIN
1ut7_A5e-171315517162NO APICAL MERISTEM PROTEIN
1ut4_B5e-171315517162NO APICAL MERISTEM PROTEIN
1ut4_A5e-171315517162NO APICAL MERISTEM PROTEIN
3swp_D6e-171315520165NAC domain-containing protein 19
3swp_C6e-171315520165NAC domain-containing protein 19
3swp_B6e-171315520165NAC domain-containing protein 19
3swp_A6e-171315520165NAC domain-containing protein 19
3swm_D6e-171315520165NAC domain-containing protein 19
3swm_C6e-171315520165NAC domain-containing protein 19
3swm_B6e-171315520165NAC domain-containing protein 19
3swm_A6e-171315520165NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGVIT_15s0048g02270.t012e-33(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1985225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-24NAC transcription factor-like 9